TCP11 TCP family transcription factor [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: TCP11
Gene description: TCP family transcription factor
Primary source: Araport:AT5G08330
Locus tag: AT5G08330
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AtTCP21; CCA1 HIKING EXPEDITION; CHE; F8L15.60; F8L15_60; TCP domain protein 11; TCP domain protein 21; TCP21
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Genomic context

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See TCP11 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 1

Sequence:: Chromosome: 5; NC_003076.8 (2680401..2681993)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

ZTL interacts directly with CHE and can mediate CHE ubiquitylation.CHE protein is degraded in the dark.
Title: Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
Expression of a repressor form of TCP11 in plants demonstrates that TCP11 is a developmental regulator that influences growth of leaves, stems and petioles, and pollen development. Distinct DNA-binding of TCP11 is due to T15 residue in TCP domain. [TCP11]
Title: The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA-binding properties due to the presence of a threonine residue at position 15 of the TCP domain.
identification of CHE (At5g08330), a TCP transcription factor that binds specifically to the CCA1 promoter; expression of CHE is regulated by CCA1, thus adding a CCA1/CHE feedback loop to the Arabidopsis circadian network
Title: A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_120916.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IDA Inferred from Direct Assay more info	PubMed
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in negative regulation of DNA-binding transcription factor activity	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within positive regulation of circadian rhythm	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of DNA-templated transcription	TAS Traceable Author Statement more info	PubMed
involved_in regulation of circadian rhythm	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: TCP family transcription factor

NP_196450.1

TCP family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT5G23280.1); Has 954 Blast hits to 946 proteins in 163 species: Archae - 0; Bacteria - 6; Metazoa - 29; Fungi - 0; Plants - 913; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

2680401..2681993

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_120916.3 → NP_196450.1 TCP family transcription factor [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_196450.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9FTA2

UniProtKB/TrEMBL

A0A178UQG9, A0A5S9Y3A8

Conserved Domains (1) summary

cl23822
Location:29 → 104

TCP; TCP family transcription factor