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    AT5G07980 dentin sialophosphoprotein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830692, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G07980
    Gene description
    dentin sialophosphoprotein-like protein
    Primary source
    Araport:AT5G07980
    Locus tag
    AT5G07980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13G24.2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (2549038..2555724, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene asterix-like protein Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Cytochrome P450 superfamily protein Neighboring gene glucan endo-1,3-beta-glucosidase-like protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342973.1
    NM_120880.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    dentin sialophosphoprotein-like protein
    NP_196415.1
    • dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07940.2); Has 1336 Blast hits to 783 proteins in 174 species: Archae - 4; Bacteria - 291; Metazoa - 248; Fungi - 128; Plants - 141; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2549038..2555724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120880.4 → NP_196415.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196415.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y2Y5, A0A654FZB8, Q9SD86

    2. NM_001342973.1 → NP_001331534.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y2Y5, A0A654FZB8, Q9SD86
    Nucleotide Protein
    Heading Accession and Version

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