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    AT5G06800 myb-like HTH transcriptional regulator family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830570, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G06800
    Gene description
    myb-like HTH transcriptional regulator family protein
    Primary source
    Araport:AT5G06800
    Locus tag
    AT5G06800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MPH15.16; MPH15_16
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    Genomic context

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    See AT5G06800 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (2103115..2106004)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein Neighboring gene cotton fiber protein Neighboring gene pseudo Neighboring gene transcription termination factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342908.1
    NM_120763.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb-like HTH transcriptional regulator family protein
    NP_001318494.1
    • myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT2G01060.1).
    NP_196298.2
    • myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1663 Blast hits to 1650 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 6; Plants - 1631; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2103115..2106004
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342909.1 → NP_001330818.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBX9

    2. NM_001342908.1 → NP_001318494.1  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFL5, A0A2H1ZE52

    3. NM_120763.4 → NP_196298.2  myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196298.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K587, Q0WVU3, Q9FG27
      UniProtKB/TrEMBL
      A0A178UFL5, A0A5S9Y475, A0A654FZG5
      Conserved Domains (2) summary
      TIGR01557
      Location:192 → 248
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:277 → 323
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WVU3.1

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