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    EMB2453 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830116, updated on 7-Sep-2023

    Summary

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    Gene symbol
    EMB2453
    Gene description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    Araport:AT4G39620
    Locus tag
    AT4G39620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. THALIANA PENTATRICOPEPTIDE REPEAT 5; ATPPR5; EMBRYO DEFECTIVE 2453; F23K16.250; F23K16_250
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    Genomic context

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    See EMB2453 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (18395294..18397587)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) Neighboring gene tRNA-Trp Neighboring gene translation initiation factor Neighboring gene gamma-glutamyl transpeptidase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis. Cushing DA, et al. Planta, 2005 Jun. PMID 15647901
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001204041.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001190970.1
    • EMBRYO DEFECTIVE 2453 (EMB2453); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 2 (TAIR:AT1G74850.1).
    NP_195672.1
    • EMBRYO DEFECTIVE 2453 (EMB2453); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 2 (TAIR:AT1G74850.1); Has 39741 Blast hits to 13102 proteins in 279 species: Archae - 3; Bacteria - 42; Metazoa - 323; Fungi - 447; Plants - 37702; Viruses - 0; Other Eukaryotes - 1224 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18395294..18397587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120122.2 → NP_195672.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195672.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV96
      UniProtKB/TrEMBL
      A0A5S9Y037, A0A654FX52
      Conserved Domains (2) summary
      PLN03218
      Location:117 → 452
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:210 → 237
      PPR; PPR repeat [structural motif]

    2. NM_001204041.1 → NP_001190970.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190970.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7S9, F4JW43
      Conserved Domains (4) summary
      TIGR00756
      Location:244 → 278
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:210 → 237
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:204 → 233
      PPR_1; PPR repeat
      pfam13041
      Location:241 → 290
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SV96.1

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