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    AT4G39380 TSL-kinase interacting-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830093, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT4G39380
    Gene description
    TSL-kinase interacting-like protein
    Primary source
    Araport:AT4G39380
    Locus tag
    AT4G39380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23K16.10; F23K16_10
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    Genomic context

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    See AT4G39380 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (18308854..18312748, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquitin-specific protease 27 Neighboring gene nucleotide sugar transporter-KT 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001204037.1
    NM_001342539.1
    NM_001342540.1
    NM_120098.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TSL-kinase interacting-like protein
    NP_001190966.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.2).
    NP_195648.1
    • BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits to 74 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18308854..18312748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120098.3 → NP_195648.1  TSL-kinase interacting-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195648.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYK6, A0A5S9Y026, Q9SVB9

    2. NM_001342540.1 → NP_001329849.1  TSL-kinase interacting-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYK6, A0A5S9Y026, Q9SVB9

    3. NM_001342539.1 → NP_001329848.1  TSL-kinase interacting-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYK6, A0A5S9Y026, Q9SVB9

    4. NM_001204037.1 → NP_001190966.1  TSL-kinase interacting-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190966.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYK6, F4JVE0
    Nucleotide Protein
    Heading Accession and Version

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