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    AT4G21660 proline-rich spliceosome-associated (PSP) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828253, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT4G21660
    Gene description
    proline-rich spliceosome-associated (PSP) family protein
    Primary source
    Araport:AT4G21660
    Locus tag
    AT4G21660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17L22.120; F17L22_120
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    Genomic context

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    See AT4G21660 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Sequence:
    Chromosome: 4; NC_003075.7 (11505823..11509907, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Subtilase family protein Neighboring gene Subtilase family protein Neighboring gene C-terminal domain phosphatase-like 1 Neighboring gene NITRATE TRANSPORTER 1.8 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203860.1
    NM_001341508.1
    NM_118286.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    proline-rich spliceosome-associated (PSP) family protein
    NP_001190789.1
    • proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1).
    NP_193897.2
    • proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1); Has 10486 Blast hits to 6076 proteins in 488 species: Archae - 22; Bacteria - 303; Metazoa - 4991; Fungi - 920; Plants - 455; Viruses - 239; Other Eukaryotes - 3556 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11505823..11509907 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118286.4 → NP_193897.2  proline-rich spliceosome-associated (PSP) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193897.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USQ1, A0A5S9XUX9, Q8H0V8
      Conserved Domains (2) summary
      smart00581
      Location:304 → 357
      PSP; proline-rich domain in spliceosome associated proteins
      pfam04037
      Location:174 → 299
      DUF382; Domain of unknown function (DUF382)

    2. NM_001341508.1 → NP_001328547.1  proline-rich spliceosome-associated (PSP) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USE8, A0A1P8B4Y6

    3. NM_001203860.1 → NP_001190789.1  proline-rich spliceosome-associated (PSP) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190789.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178USQ1, A0A5S9XUX9, F4JJM1
      Conserved Domains (2) summary
      smart00581
      Location:318 → 371
      PSP; proline-rich domain in spliceosome associated proteins
      pfam04037
      Location:174 → 313
      DUF382; Domain of unknown function (DUF382)
    Nucleotide Protein
    Heading Accession and Version

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