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    RAP74 transcription initiation factor IIF subunit alpha RAP74 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826874, updated on 6-Oct-2023

    Summary

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    Gene symbol
    RAP74
    Gene description
    transcription initiation factor IIF subunit alpha RAP74
    Primary source
    Araport:AT4G12610
    Locus tag
    AT4G12610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRAP74; T1P17.200; T1P17_200
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    Genomic context

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    See RAP74 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (7454722..7458422)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane) Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene B3 domain protein Neighboring gene origin of replication complex 1B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis carboxyl-terminal domain phosphatase-like isoforms share common catalytic and interaction domains but have distinct in planta functions. Bang W, et al. Plant Physiol, 2006 Oct. PMID 16905668, Free PMC Article
    2. Arabidopsis CBP1 Is a Novel Regulator of Transcription Initiation in Central Cell-Mediated Pollen Tube Guidance. Li HJ, et al. Plant Cell, 2015 Oct. PMID 26462908, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001340791.1
    NM_001340792.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription initiation factor IIF subunit alpha RAP74
    NP_001319913.1
    • RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, transcription activator activity, DNA binding, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot, root, guard cell; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039); Has 33758 Blast hits to 21623 proteins in 1111 species: Archae - 118; Bacteria - 4904; Metazoa - 11974; Fungi - 5901; Plants - 2006; Viruses - 435; Other Eukaryotes - 8420 (source: NCBI BLink).
    NP_001319914.1
    • RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding, transcription activator activity, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot, root, guard cell; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039); Has 34394 Blast hits to 22751 proteins in 1168 species: Archae - 120; Bacteria - 4390; Metazoa - 12539; Fungi - 6082; Plants - 2082; Viruses - 445; Other Eukaryotes - 8736 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7454722..7458422
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340791.1 → NP_001319913.1  transcription initiation factor IIF subunit alpha RAP74 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V535, A0A5S9XRQ9
      Conserved Domains (1) summary
      pfam05793
      Location:48 → 542
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

    2. NM_001340792.1 → NP_001319914.1  transcription initiation factor IIF subunit alpha RAP74 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JRD5, F4JRD6, Q6S7B9, Q9SU25
      UniProtKB/TrEMBL
      A0A654FNI8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SU25.1

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