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    AT3G58980 F-box family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825067, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G58980
    Gene description
    F-box family protein
    Primary source
    Araport:AT3G58980
    Locus tag
    AT3G58980
    See related
    TAIR:AT3G58980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G58980 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (21794445..21797006, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene magnesium transporter 6 Neighboring gene miscRNA Neighboring gene isopropylmalate isomerase 1 Neighboring gene F-box/RNI-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115760.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box family protein
    NP_191457.2
    • F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58920.1); Has 1957 Blast hits to 1579 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1956; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21794445..21797006 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115760.2 → NP_191457.2  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191457.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z3K9, P0C2G1, Q9LYT8
      UniProtKB/TrEMBL
      A0A654FJ28
      Conserved Domains (4) summary
      smart00579
      Location:374 → 440
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:128 → 153
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:2 → 49
      F-box; F-box domain
      pfam07723
      Location:452 → 480
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C2G1.1

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