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    AT3G54910 RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824656, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT3G54910
    Gene description
    RNI-like superfamily protein
    Primary source
    Araport:AT3G54910
    Locus tag
    AT3G54910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20342753..20345594, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene chlorophyll a-b binding protein 6 Neighboring gene CAX interacting protein 1 Neighboring gene Pectin lyase-like superfamily protein Neighboring gene miscRNA Neighboring gene Plant self-incompatibility protein S1 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001035786.3
    NM_001084820.2
    NM_115348.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNI-like superfamily protein
    NP_001030863.1
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078289.1
    • RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 997 Blast hits to 979 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 993; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_191051.2
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 997 Blast hits to 979 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 993; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20342753..20345594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115348.4 → NP_191051.2  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191051.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FFV3, Q501B7, Q9SV39
      Conserved Domains (3) summary
      smart00579
      Location:303 → 373
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:91 → 112
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:112 → 137
      LRR_2; Leucine Rich Repeat

    2. NM_001035786.3 → NP_001030863.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030863.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FFV3, Q501B7, Q9SV39
      Conserved Domains (3) summary
      smart00579
      Location:303 → 373
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:91 → 112
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:112 → 137
      LRR_2; Leucine Rich Repeat

    3. NM_001084820.2 → NP_001078289.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078289.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FFV3, Q501B7, Q9SV39
      Conserved Domains (3) summary
      smart00579
      Location:303 → 373
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:91 → 112
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:112 → 137
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version

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