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    AT3G52030 F-box family protein with WD40/YVTN repeat doamin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824366, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G52030
    Gene description
    F-box family protein with WD40/YVTN repeat doamin
    Primary source
    Araport:AT3G52030
    Locus tag
    AT3G52030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G52030 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (19301778..19304253)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 37 Neighboring gene serine carboxypeptidase-like 39 Neighboring gene ncRNA Neighboring gene 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase Neighboring gene ncRNA Neighboring gene 5'-3' exonuclease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. Zhang Y, et al. Plant Cell, 2008 Jun. PMID 18552200, Free PMC Article
    2. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203134.1
    NM_115062.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box family protein with WD40/YVTN repeat doamin
    NP_001190063.1
    • F-box family protein with WD40/YVTN repeat doamin; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), F-box domain, Skp2-like (InterPro:IPR022364), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781).
    NP_190771.2
    • F-box family protein with WD40/YVTN repeat doamin; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), WD40 repeat-like-containing domain (InterPro:IPR011046), F-box domain, Skp2-like (InterPro:IPR022364), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 641 Blast hits to 623 proteins in 165 species: Archae - 0; Bacteria - 72; Metazoa - 330; Fungi - 119; Plants - 62; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19301778..19304253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203134.1 → NP_001190063.1  F-box family protein with WD40/YVTN repeat doamin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190063.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAG7, A0A384KQS4, A0A654FF14, F4J5P7
      Conserved Domains (3) summary
      sd00039
      Location:122 → 158
      7WD40; WD40 repeat [structural motif]
      pfam00646
      Location:22 → 64
      F-box; F-box domain
      cl29593
      Location:114 → 360
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. NM_115062.2 → NP_190771.2  F-box family protein with WD40/YVTN repeat doamin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190771.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV01
      UniProtKB/TrEMBL
      A0A654FF14
      Conserved Domains (4) summary
      COG2319
      Location:108 → 401
      WD40; WD40 repeat [General function prediction only]
      pfam00646
      Location:22 → 68
      F-box; F-box domain
      sd00039
      Location:263 → 298
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:114 → 381
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SV01.2

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