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    PIRL2 plant intracellular ras group-related LRR 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822257, updated on 7-Sep-2023

    Summary

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    Gene symbol
    PIRL2
    Gene description
    plant intracellular ras group-related LRR 2
    Primary source
    Araport:AT3G26500
    Locus tag
    AT3G26500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFE16.10; plant intracellular ras group-related LRR 2
    Summary
    Encodes PIRL2, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
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    Genomic context

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    See PIRL2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (9707912..9710100, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene ncRNA Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Plant Intracellular Ras-group LRR (PIRL) Family and the Value of Reverse Genetic Analysis for Identifying Genes that Function in Gametophyte Development. Forsthoefel NR, et al. Plants (Basel), 2013 Aug 9. PMID 27137390, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_113557.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within microgametogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    plant intracellular ras group-related LRR 2
    NP_189281.2
    • plant intracellular ras group-related LRR 2 (PIRL2); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 3 (TAIR:AT1G12970.1); Has 88229 Blast hits to 35961 proteins in 1363 species: Archae - 28; Bacteria - 8944; Metazoa - 35427; Fungi - 2710; Plants - 36018; Viruses - 25; Other Eukaryotes - 5077 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9707912..9710100 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113557.3 → NP_189281.2  plant intracellular ras group-related LRR 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189281.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LRV8
      UniProtKB/TrEMBL
      A0A178VDK6, A0A7G2ELL5
      Conserved Domains (4) summary
      PRK15370
      Location:47 → 288
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      COG4886
      Location:173 → 358
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:162 → 184
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:347 → 382
      LRR_4; Leucine Rich repeats (2 copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRV8.1

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