U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    AT3G25190 Vacuolar iron transporter (VIT) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822112, updated on 15-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    AT3G25190
    Gene description
    Vacuolar iron transporter (VIT) family protein
    Primary source
    Araport:AT3G25190
    Locus tag
    AT3G25190
    See related
    TAIR:AT3G25190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtVTL5; MJL12.26; Vacuolar Iron Transporter-Like 5; VTL5
    Summary
    The gene encodes nodulin-like21 whose transcript abundance was repressed under conditions of Fe-deficient growth.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AT3G25190 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (9174398..9175866)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 82, subfamily G, polypeptide 1 Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Vacuolar-Iron-Transporter1-Like proteins mediate iron homeostasis in Arabidopsis. Gollhofer J, et al. PLoS One, 2014. PMID 25360591, Free PMC Article
    2. Members of a small family of nodulin-like genes are regulated under iron deficiency in roots of Arabidopsis thaliana. Gollhofer J, et al. Plant Physiol Biochem, 2011 May. PMID 21411332
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The expression of At3g25190 was repressed in response to iron deficiency in Arabidopsis roots.
      Title: Members of a small family of nodulin-like genes are regulated under iron deficiency in roots of Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_113425.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables iron ion transmembrane transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables manganese ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular iron ion homeostasis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in intracellular manganese ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in intracellular sequestering of iron ion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to iron ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Vacuolar iron transporter (VIT) family protein
    NP_189156.1
    • Vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT3G43660.1); Has 1809 Blast hits to 1804 proteins in 621 species: Archae - 86; Bacteria - 1207; Metazoa - 0; Fungi - 93; Plants - 206; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9174398..9175866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113425.2 → NP_189156.1  Vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189156.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94JS5, Q9LSF6
      UniProtKB/TrEMBL
      A0A178VAT5, A0A5S9XFF4
      Conserved Domains (1) summary
      cl00278
      Location:34 → 185
      CCC1_like; CCC1-related family of proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSF6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools