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    AT3G15430 Regulator of chromosome condensation (RCC1) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820782, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G15430
    Gene description
    Regulator of chromosome condensation (RCC1) family protein
    Primary source
    Araport:AT3G15430
    Locus tag
    AT3G15430
    See related
    TAIR:AT3G15430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G15430 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (5208559..5211779)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene Transcription factor TFIIIC, tau55-related protein Neighboring gene RING/U-box protein Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene Ribosomal RNA processing Brix domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Miscellaneous features

    • Loc: 5209169-5209315 AT3G15430.uORF1
    NM_001338171.1
    NM_001338172.1
    NM_001338173.1
    NM_112411.3
    NM_202594.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Regulator of chromosome condensation (RCC1) family protein
    NP_566512.1
    • Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G26100.2); Has 18094 Blast hits to 5607 proteins in 419 species: Archae - 68; Bacteria - 2169; Metazoa - 6534; Fungi - 1176; Plants - 2879; Viruses - 4; Other Eukaryotes - 5264 (source: NCBI BLink).
    NP_974323.1
    • Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G26100.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5208559..5211779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338170.1 → NP_001325716.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
      Conserved Domains (2) summary
      COG5184
      Location:129 → 465
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      pfam00646
      Location:9 → 58
      F-box; F-box domain

    2. NM_202594.3 → NP_974323.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974323.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
      Conserved Domains (2) summary
      COG5184
      Location:129 → 465
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      pfam00646
      Location:9 → 58
      F-box; F-box domain

    3. NM_001338171.1 → NP_001325718.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
      Conserved Domains (2) summary
      COG5184
      Location:129 → 465
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      pfam00646
      Location:9 → 58
      F-box; F-box domain

    4. NM_001338172.1 → NP_001325717.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
      Conserved Domains (2) summary
      COG5184
      Location:129 → 465
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      pfam00646
      Location:9 → 58
      F-box; F-box domain

    5. NM_112411.3 → NP_566512.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566512.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
      Conserved Domains (2) summary
      COG5184
      Location:129 → 465
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      pfam00646
      Location:9 → 58
      F-box; F-box domain

    6. NM_001338173.1 → NP_001325719.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
      Conserved Domains (2) summary
      COG5184
      Location:129 → 465
      ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      pfam00646
      Location:9 → 58
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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