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    AT2G45700 sterile alpha motif (SAM) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819178, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT2G45700
    Gene description
    sterile alpha motif (SAM) domain-containing protein
    Primary source
    Araport:AT2G45700
    Locus tag
    AT2G45700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4I18.32
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (18826937..18830664, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene shrunken seed protein (SSE1) Neighboring gene Ubiquitin related modifier 1 Neighboring gene Zinc-binding ribosomal protein family protein Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337147.1
    NM_130133.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    sterile alpha motif (SAM) domain-containing protein
    NP_182094.1
    • sterile alpha motif (SAM) domain-containing protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129), DNA repair metallo-beta-lactamase (InterPro:IPR011084), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT3G26680.3); Has 2157 Blast hits to 2099 proteins in 358 species: Archae - 119; Bacteria - 227; Metazoa - 850; Fungi - 290; Plants - 353; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18826937..18830664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130133.4 → NP_182094.1  sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182094.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X7A5, A0A654F290, O64649
      Conserved Domains (3) summary
      cd16273
      Location:381 → 534
      SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
      pfam00536
      Location:244 → 300
      SAM_1; SAM domain (Sterile alpha motif)
      pfam07522
      Location:604 → 709
      DRMBL; DNA repair metallo-beta-lactamase

    2. NM_001337147.1 → NP_001323744.1  sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY35
    Nucleotide Protein
    Heading Accession and Version

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