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    CLE4 CLAVATA3/ESR-RELATED 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817661, updated on 7-Sep-2023

    Summary

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    Gene symbol
    CLE4
    Gene description
    CLAVATA3/ESR-RELATED 4
    Primary source
    Araport:AT2G31081
    Locus tag
    AT2G31081
    See related
    TAIR:AT2G31081
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLAVATA3/ESR-RELATED 4
    Summary
    Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.
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    Genomic context

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    See CLE4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (13238021..13238628)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene TCP domain protein 10 Neighboring gene pseudo Neighboring gene CLAVATA3/ESR-RELATED 7 Neighboring gene CLAVATA3/ESR-RELATED 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gain-of-function phenotypes of many CLAVATA3/ESR genes, including four new family members, correlate with tandem variations in the conserved CLAVATA3/ESR domain. Strabala TJ, et al. Plant Physiol, 2006 Apr. PMID 16489133, Free PMC Article
    2. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_179826.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in cell-cell signaling involved in cell fate commitment ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within regulation of meristem growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CLAVATA3/ESR-RELATED 4
    NP_850157.1
    • CLAVATA3/ESR-RELATED 4 (CLE4); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 3 (TAIR:AT1G06225.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13238021..13238628
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179826.2 → NP_850157.1  CLAVATA3/ESR-RELATED 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850157.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S8N0
      UniProtKB/TrEMBL
      A0A178VVL0, A0A5S9X2V8, A0A654F8E3
      Conserved Domains (1) summary
      cl00299
      Location:25 → 52
      MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S8N0.1

    Gene LinkOut

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    Research Materials