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    LBD11 LOB domain-containing protein 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817398, updated on 15-Oct-2023

    Summary

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    Gene symbol
    LBD11
    Gene description
    LOB domain-containing protein 11
    Primary source
    Araport:AT2G28500
    Locus tag
    AT2G28500
    See related
    TAIR:AT2G28500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LOB domain-containing protein 11; T17D12.6; T17D12_6
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    Genomic context

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    See LBD11 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (12186274..12188293, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene vacuolar proton ATPase A1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Growth's secret maestros: LBD11-ROS harmony drives vascular cambium activity in Arabidopsis.
      Title: Growth's secret maestros: LBD11-ROS harmony drives vascular cambium activity in Arabidopsis.
    2. The LBD11-ROS feedback regulatory loop modulates vascular cambium proliferation and secondary growth in Arabidopsis.
      Title: The LBD11-ROS feedback regulatory loop modulates vascular cambium proliferation and secondary growth in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_128410.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of reactive oxygen species metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LOB domain-containing protein 11
    NP_180417.2
    • LOB domain-containing protein 11 (LBD11); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 1 (TAIR:AT1G07900.1); Has 1191 Blast hits to 1170 proteins in 85 species: Archae - 8; Bacteria - 66; Metazoa - 21; Fungi - 2; Plants - 1049; Viruses - 10; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12186274..12188293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128410.3 → NP_180417.2  LOB domain-containing protein 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180417.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG61, Q9SK08
      UniProtKB/TrEMBL
      A0A5S9X273, A0A654EY48
      Conserved Domains (1) summary
      pfam03195
      Location:55 → 152
      LOB; Lateral organ boundaries (LOB) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SK08.2

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