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    AT2G25520 Drug/metabolite transporter superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817090, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT2G25520
    Gene description
    Drug/metabolite transporter superfamily protein
    Primary source
    Araport:AT2G25520
    Locus tag
    AT2G25520
    See related
    TAIR:AT2G25520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13B15.18; F13B15_18
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    Genomic context

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    See AT2G25520 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (10860668..10862410)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Inosine triphosphate pyrophosphatase family protein Neighboring gene uncharacterized protein Neighboring gene AFG1-like ATPase family protein Neighboring gene cellulose synthase A catalytic subunit 3 UDP-forming-like protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_128109.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables organic anion transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in endosome HDA PubMed 
    located_in trans-Golgi network HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Drug/metabolite transporter superfamily protein
    NP_180122.1
    • Drug/metabolite transporter superfamily protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G32390.1); Has 2445 Blast hits to 2439 proteins in 251 species: Archae - 0; Bacteria - 11; Metazoa - 512; Fungi - 442; Plants - 1237; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10860668..10862410
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128109.3 → NP_180122.1  Drug/metabolite transporter superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180122.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHU9, Q9SKJ7
      UniProtKB/TrEMBL
      A0A178W2X2, A0A1W6AJY7, A0A384L7X6, A0A5S9X1L7, A0A654EW30
      Conserved Domains (1) summary
      cl26744
      Location:21 → 306
      TPT; Triose-phosphate Transporter family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SKJ7.1

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