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    AT2G25420 transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817080, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT2G25420
    Gene description
    transducin family protein / WD-40 repeat family protein
    Primary source
    Araport:AT2G25420
    Locus tag
    AT2G25420
    See related
    TAIR:AT2G25420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13B15.8; F13B15_8
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    Genomic context

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    See AT2G25420 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Sequence:
    Chromosome: 2; NC_003071.7 (10816749..10821168)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Arg Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein Neighboring gene receptor like protein 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel protein complex that regulates active DNA demethylation in Arabidopsis. Liu P, et al. J Integr Plant Biol, 2021 Apr. PMID 33615694
    2. Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. Zhang Y, et al. Plant Cell, 2008 Jun. PMID 18552200, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001335994.1
    NM_128099.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transducin family protein / WD-40 repeat family protein
    NP_565594.3
    • transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WUS-interacting protein 2 (TAIR:AT3G15880.1); Has 3410 Blast hits to 2683 proteins in 316 species: Archae - 2; Bacteria - 469; Metazoa - 1038; Fungi - 599; Plants - 625; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10816749..10821168
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335996.1 → NP_001325219.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VX59, A0A1P8B2K0
      Conserved Domains (4) summary
      smart00667
      Location:191 → 221
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:37 → 86
      CTLH; C-terminal to LisH motif
      sd00039
      Location:545 → 587
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:466 → 718
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. NM_001335995.1 → NP_001325218.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVJ3, A0A1P8B2H9, A0A5S9X133
      Conserved Domains (3) summary
      smart00667
      Location:191 → 221
      LisH; Lissencephaly type-1-like homology motif
      sd00039
      Location:538 → 580
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:391 → 662
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. NM_128099.4 → NP_565594.3  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565594.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVJ3, A0A5S9X133, Q0WVR3
      Conserved Domains (4) summary
      smart00667
      Location:191 → 221
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:37 → 86
      CTLH; C-terminal to LisH motif
      sd00039
      Location:538 → 580
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:391 → 662
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. NM_001335994.1 → NP_001325217.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VX59, A0A1P8B2H7
      Conserved Domains (3) summary
      smart00667
      Location:191 → 221
      LisH; Lissencephaly type-1-like homology motif
      sd00039
      Location:545 → 587
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:466 → 675
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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