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    AT1G67900 Phototropic-responsive NPH3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843118, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G67900
    Gene description
    Phototropic-responsive NPH3 family protein
    Primary source
    Araport:AT1G67900
    Locus tag
    AT1G67900
    See related
    TAIR:AT1G67900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23K23.25; T23K23_25
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    Genomic context

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    See AT1G67900 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (25464376..25470189)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetylglucosaminyltransferase family protein Neighboring gene PAS domain-containing protein tyrosine kinase family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Golgi transport complex protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001198418.1
    NM_001334337.1
    NM_001334338.1
    NM_105460.6
    NM_202374.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Phototropic-responsive NPH3 family protein
    NP_001185347.1
    • Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G26490.1).
    NP_001319340.1
    • Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G26490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_176957.1
    • Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G26490.1); Has 888 Blast hits to 861 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 877; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25464376..25470189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334336.1 → NP_001319340.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9V6
      UniProtKB/TrEMBL
      A0A178W6L6, A0A654ENJ1
      Conserved Domains (2) summary
      cl38908
      Location:22 → 120
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:201 → 485
      NPH3; NPH3 family

    2. NM_105460.6 → NP_176957.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176957.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9V6
      UniProtKB/TrEMBL
      A0A178W6L6, A0A654ENJ1
      Conserved Domains (2) summary
      cl38908
      Location:22 → 120
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:201 → 485
      NPH3; NPH3 family

    3. NM_001334337.1 → NP_001322485.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9V6
      UniProtKB/TrEMBL
      A0A178W6L6, A0A654ENJ1
      Conserved Domains (2) summary
      cl38908
      Location:22 → 120
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:201 → 485
      NPH3; NPH3 family

    4. NM_202374.3 → NP_974103.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974103.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9V6
      UniProtKB/TrEMBL
      A0A178W6L6, A0A654ENJ1
      Conserved Domains (2) summary
      cl38908
      Location:22 → 120
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:201 → 485
      NPH3; NPH3 family

    5. NM_001198418.1 → NP_001185347.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185347.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9V6
      UniProtKB/TrEMBL
      A0A178W6L6, A0A654ENJ1
      Conserved Domains (2) summary
      cl38908
      Location:22 → 120
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:201 → 485
      NPH3; NPH3 family

    6. NM_001334338.1 → NP_001322484.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9V6
      UniProtKB/TrEMBL
      A0A178W6L6, A0A654ENJ1
      Conserved Domains (2) summary
      cl38908
      Location:22 → 120
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam03000
      Location:201 → 485
      NPH3; NPH3 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9V6.1

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