U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    AT1G60995 S3 self-incompatibility locus-linked pollen protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 5007825, updated on 6-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    AT1G60995
    Gene description
    S3 self-incompatibility locus-linked pollen protein
    Primary source
    Araport:AT1G60995
    Locus tag
    AT1G60995
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (22465571..22470839, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SCR-like 5 Neighboring gene Glycine cleavage T-protein family Neighboring gene SCR-like 7 Neighboring gene kinetochore protein Neighboring gene cleavage and polyadenylation specificity factor 73-I Neighboring gene tRNA-Arg

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. HIGH STEROL ESTER 1 is a key factor in plant sterol homeostasis. Shimada TL, et al. Nat Plants, 2019 Nov. PMID 31712757
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. functions as a key factor in plant sterol homeostasis
      Title: HIGH STEROL ESTER 1 is a key factor in plant sterol homeostasis.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_001084280.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of sterol biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    S3 self-incompatibility locus-linked pollen protein
    NP_001077749.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22465571..22470839 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084280.2 → NP_001077749.1  S3 self-incompatibility locus-linked pollen protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077749.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWG6, Q9C953
      UniProtKB/TrEMBL
      A0A178WMM3, A0A5S9WRA8, A0A654EVM1
      Conserved Domains (1) summary
      pfam09746
      Location:7 → 419
      Membralin; tumor-associated protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWG6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Tools