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    AT1G60890 Phosphatidylinositol-4-phosphate 5-kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842381, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT1G60890
    Gene description
    Phosphatidylinositol-4-phosphate 5-kinase family protein
    Primary source
    Araport:AT1G60890
    Locus tag
    AT1G60890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7P1.4; T7P1_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (22412188..22417312, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene maternal effect embryo arrest 9 Neighboring gene AGAMOUS-like-56 Neighboring gene U2 snRNP auxilliary factor, large subunit, splicing factor Neighboring gene tRNA-Gly

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Phosphatidylinositol Phosphate 5-Kinase PIP5K3 is a key regulator of root hair tip growth. Kusano H, et al. Plant Cell, 2008 Feb. PMID 18281506, Free PMC Article
    2. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198346.1
    NM_104770.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol-4-phosphate 5-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Phosphatidylinositol-4-phosphate 5-kinase family protein
    NP_001185275.1
    • Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G10900.1).
    NP_176286.2
    • Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G10900.1); Has 27589 Blast hits to 7854 proteins in 612 species: Archae - 0; Bacteria - 4141; Metazoa - 4565; Fungi - 466; Plants - 1709; Viruses - 0; Other Eukaryotes - 16708 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22412188..22417312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104770.5 → NP_176286.2  Phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176286.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY89, Q9C962
      UniProtKB/TrEMBL
      A0A178WK69, A0A5S9WR03
      Conserved Domains (1) summary
      PLN03185
      Location:7 → 766
      PLN03185; phosphatidylinositol phosphate kinase; Provisional

    2. NM_001198346.1 → NP_001185275.1  Phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185275.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HRM3
      Conserved Domains (4) summary
      smart00698
      Location:141 → 162
      MORN; Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases
      smart00330
      Location:384 → 777
      PIPKc; Phosphatidylinositol phosphate kinases
      PLN03185
      Location:19 → 778
      PLN03185; phosphatidylinositol phosphate kinase; Provisional
      pfam02493
      Location:120 → 142
      MORN; MORN repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RY89.1

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