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    ABCG13 ABC-2 type transporter family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841571, updated on 7-Sep-2023

    Summary

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    Gene symbol
    ABCG13
    Gene description
    ABC-2 type transporter family protein
    Primary source
    Araport:AT1G51460
    Locus tag
    AT1G51460
    See related
    TAIR:AT1G51460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATP-binding cassette G13; F5D21.8; F5D21_8
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    Genomic context

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    See ABCG13 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (19076838..19081451, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene TRAUCO Neighboring gene beta glucosidase 35 Neighboring gene disease resistance protein (CC-NBS-LRR class) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis ABCG13 transporter is required for flower cuticle secretion and patterning of the petal epidermis. Panikashvili D, et al. New Phytol, 2011 Apr. PMID 21232060
    2. The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion. Panikashvili D, et al. Plant Physiol, 2007 Dec. PMID 17951461, Free PMC Article
    3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ABCG13 is required for the transport of flower cuticular lipids.[ABCG13]
      Title: The Arabidopsis ABCG13 transporter is required for flower cuticle secretion and patterning of the petal epidermis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104024.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cutin transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within petal epidermis patterning IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt stress IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    ABC-2 type transporter family protein
    NP_175557.1
    • ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G21090.1); Has 379847 Blast hits to 348933 proteins in 4101 species: Archae - 6887; Bacteria - 304547; Metazoa - 7636; Fungi - 6582; Plants - 5428; Viruses - 18; Other Eukaryotes - 48749 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19076838..19081451 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104024.3 → NP_175557.1  ABC-2 type transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175557.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GX48, Q9C8J8
      UniProtKB/TrEMBL
      A0A5S9WNI2, A0A654EMJ7, A0A7G2E1G5
      Conserved Domains (1) summary
      TIGR00955
      Location:27 → 627
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8J8.1

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