U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    AT1G48510 Surfeit locus 1 cytochrome c oxidase biogenesis protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841272, updated on 7-Sep-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    AT1G48510
    Gene description
    Surfeit locus 1 cytochrome c oxidase biogenesis protein
    Primary source
    Araport:AT1G48510
    Locus tag
    AT1G48510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1N15.12; T1N15_12
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (17934746..17936946)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene jasmonate-zim-domain protein 4 Neighboring gene GLU-ADT subunit B Neighboring gene proteasome inhibitor-like protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis thaliana SURFEIT1-like genes link mitochondrial function to early plant development and hormonal growth responses. Gras DE, et al. Plant J, 2020 Jul. PMID 32248588
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001333339.1
    NM_103747.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within seedling development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Surfeit locus 1 cytochrome c oxidase biogenesis protein
    NP_001319175.1
    • Surfeit locus 1 cytochrome c oxidase biogenesis protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Surfeit locus 1 (InterPro:IPR002994); BEST Arabidopsis thaliana protein match is: Surfeit locus 1 cytochrome c oxidase biogenesis protein (TAIR:AT3G17910.1).
    NP_175284.2
    • Surfeit locus 1 cytochrome c oxidase biogenesis protein; CONTAINS InterPro DOMAIN/s: Surfeit locus 1 (InterPro:IPR002994); BEST Arabidopsis thaliana protein match is: Surfeit locus 1 cytochrome c oxidase biogenesis protein (TAIR:AT3G17910.1); Has 339 Blast hits to 337 proteins in 81 species: Archae - 0; Bacteria - 17; Metazoa - 64; Fungi - 36; Plants - 44; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17934746..17936946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333340.1 → NP_001321913.1  Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNR9, A0A1P8ASC2

    2. NM_001333341.1 → NP_001321912.1  Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASC1

    3. NM_001333339.1 → NP_001319175.1  Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WPY3, A0A654EGT7, F4HYG9
      Conserved Domains (1) summary
      cl01321
      Location:109 → 264
      SURF1; SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring ...

    4. NM_103747.2 → NP_175284.2  Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175284.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HYG8, Q9LP74
      UniProtKB/TrEMBL
      A0A5S9WPY3
      Conserved Domains (1) summary
      pfam02104
      Location:89 → 295
      SURF1; SURF1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LP74.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools