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    AT1G31040 PLATZ transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839990, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT1G31040
    Gene description
    PLATZ transcription factor family protein
    Primary source
    Araport:AT1G31040
    Locus tag
    AT1G31040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17F8.4
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    Genomic context

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    See AT1G31040 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (11069510..11072564, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene N-acetylglucosamine-1-phosphate uridylyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ORESARA 15, a PLATZ transcription factor, controls root meristem size through auxin and cytokinin signalling-related pathways. Timilsina R, et al. J Exp Bot, 2022 Apr 18. PMID 35139177
    2. ORESARA15 Acts Synergistically with ANGUSTIFOLIA3 and Separately from AINTEGUMENTA to Promote Cell Proliferation during Leaf Growth. Jun SE, et al. Int J Mol Sci, 2019 Dec 29. PMID 31905806, Free PMC Article
    3. ORESARA15, a PLATZ transcription factor, mediates leaf growth and senescence in Arabidopsis. Kim JH, et al. New Phytol, 2018 Oct. PMID 29949656
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ORE15 expression partially overlapped with AN3/GIF1 and ANT expression along the midvein in the proximal region of the leaf blade in young leaves. Genetic analysis revealed that ORE15 may function synergistically with AN3 to control leaf growth as a positive regulator of cell proliferation.
      Title: ORESARA15 Acts Synergistically with ANGUSTIFOLIA3 and Separately from AINTEGUMENTA to Promote Cell Proliferation during Leaf Growth.
    2. ORE15 enhanced leaf growth by promoting the rate and duration of cell proliferation in the earlier stage and suppressed leaf senescence in the later stage by modulating the GROWTH-REGULATING FACTOR (GRF)/GRF-INTERACTING FACTOR regulatory pathway.[ORESARA15]
      Title: ORESARA15, a PLATZ transcription factor, mediates leaf growth and senescence in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    NM_102842.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to auxin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to cytokinin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PLATZ transcription factor family protein
    NP_174390.2
    • PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT2G12646.1); Has 411 Blast hits to 411 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 411; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11069510..11072564 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102842.3 → NP_174390.2  PLATZ transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174390.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WJ77, F4I7U9
      Conserved Domains (1) summary
      pfam04640
      Location:73 → 143
      PLATZ; PLATZ transcription factor
    Nucleotide Protein
    Heading Accession and Version

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