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    AT1G16690 Enhancer of polycomb-like transcription factor protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838238, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G16690
    Gene description
    Enhancer of polycomb-like transcription factor protein
    Primary source
    Araport:AT1G16690
    Locus tag
    AT1G16690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K19.2; F19K19_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (5705897..5709563)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene Alpha-helical ferredoxin Neighboring gene p300/CBP acetyltransferase-related protein-like protein Neighboring gene histone acetyltransferase of the CBP family 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NuA4 and H2A.Z control environmental responses and autotrophic growth in Arabidopsis. Bieluszewski T, et al. Nat Commun, 2022 Jan 12. PMID 35022409, Free PMC Article
    2. The Arabidopsis NuA4 histone acetyltransferase complex is required for chlorophyll biosynthesis and photosynthesis. Zhou JX, et al. J Integr Plant Biol, 2022 Apr. PMID 35043580
    3. The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing. Tan LM, et al. EMBO J, 2018 Oct 1. PMID 30104406, Free PMC Article
    4. AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex. Bieluszewski T, et al. BMC Plant Biol, 2015 Mar 5. PMID 25849764, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101529.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of NuA4 histone acetyltransferase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Enhancer of polycomb-like transcription factor protein
    NP_173113.2
    • Enhancer of polycomb-like transcription factor protein; CONTAINS InterPro DOMAIN/s: Enhancer of polycomb-like (InterPro:IPR019542); BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT1G79020.1); Has 400 Blast hits to 400 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 185; Fungi - 95; Plants - 75; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5705897..5709563
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101529.5 → NP_173113.2  Enhancer of polycomb-like transcription factor protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173113.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W458, A0A5S9UR17, Q9FX82
      Conserved Domains (1) summary
      pfam10513
      Location:7 → 141
      EPL1; Enhancer of polycomb-like
    Nucleotide Protein
    Heading Accession and Version

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