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    AT1G15350 DUF4050 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838104, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G15350
    Gene description
    DUF4050 family protein
    Primary source
    Araport:AT1G15350
    Locus tag
    AT1G15350
    See related
    TAIR:AT1G15350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.29; F9L1_29
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    Genomic context

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    See AT1G15350 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (5278027..5279988, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cystathionine beta-synthase (CBS) protein Neighboring gene methyl-CPG-binding domain 10 Neighboring gene miscRNA Neighboring gene Integrase-type DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332160.1
    NM_001332161.1
    NM_001332162.1
    NM_101404.3
    NM_179336.4
    NM_179337.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DUF4050 family protein
    NP_563972.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    NP_849667.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    NP_849668.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 145 Blast hits to 145 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5278027..5279988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179337.2 → NP_849668.1  DUF4050 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849668.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WPV4, A0A384LKR9, Q9XI35
      Conserved Domains (1) summary
      pfam13259
      Location:1 → 108
      DUF4050; Protein of unknown function (DUF4050)

    2. NM_001332160.1 → NP_001320998.1  DUF4050 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WPV4, A0A384LKR9, Q9XI35
      Conserved Domains (1) summary
      pfam13259
      Location:1 → 108
      DUF4050; Protein of unknown function (DUF4050)

    3. NM_001332161.1 → NP_001320999.1  DUF4050 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WPV4, A0A384LKR9, Q9XI35
      Conserved Domains (1) summary
      pfam13259
      Location:1 → 108
      DUF4050; Protein of unknown function (DUF4050)

    4. NM_001332162.1 → NP_001321000.1  DUF4050 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WPV4, A0A384LKR9, Q9XI35
      Conserved Domains (1) summary
      pfam13259
      Location:1 → 108
      DUF4050; Protein of unknown function (DUF4050)

    5. NM_179336.4 → NP_849667.1  DUF4050 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849667.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN02, A0A5S9UK34, Q8L920
      Conserved Domains (1) summary
      pfam13259
      Location:42 → 154
      DUF4050; Protein of unknown function (DUF4050)

    6. NM_101404.3 → NP_563972.1  DUF4050 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563972.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN02, A0A5S9UK34, Q8L920
      Conserved Domains (1) summary
      pfam13259
      Location:42 → 154
      DUF4050; Protein of unknown function (DUF4050)
    Nucleotide Protein
    Heading Accession and Version

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