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    AT1G12400 Nucleotide excision repair, TFIIH, subunit TTDA [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837795, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT1G12400
    Gene description
    Nucleotide excision repair, TFIIH, subunit TTDA
    Primary source
    Araport:AT1G12400
    Locus tag
    AT1G12400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O11.12; F5O11_12
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    Genomic context

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    See AT1G12400 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (4221779..4222875)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Sec1/munc18-like (SM) proteins superfamily Neighboring gene photolyase 1 Neighboring gene uncharacterized protein Neighboring gene Cornichon family protein Neighboring gene CLP protease proteolytic subunit 2 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332033.1
    NM_001332034.1
    NM_101112.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIIH core complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Nucleotide excision repair, TFIIH, subunit TTDA
    NP_172702.1
    • Nucleotide excision repair, TFIIH, subunit TTDA; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA (InterPro:IPR009400); BEST Arabidopsis thaliana protein match is: Nucleotide excision repair, TFIIH, subunit TTDA (TAIR:AT1G62886.1); Has 174 Blast hits to 174 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4221779..4222875
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101112.3 → NP_172702.1  Nucleotide excision repair, TFIIH, subunit TTDA [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172702.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NNM0, Q9LNA6
      UniProtKB/TrEMBL
      A0A178WKZ4, A0A5S9U217
      Conserved Domains (1) summary
      pfam06331
      Location:1 → 69
      Tfb5; Transcription factor TFIIH complex subunit Tfb5

    2. NM_001332033.1 → NP_001321468.1  Nucleotide excision repair, TFIIH, subunit TTDA [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NNM0, Q9LNA6
      UniProtKB/TrEMBL
      A0A178WKZ4, A0A5S9U217
      Conserved Domains (1) summary
      pfam06331
      Location:1 → 69
      Tfb5; Transcription factor TFIIH complex subunit Tfb5

    3. NM_001332034.1 → NP_001321467.1  Nucleotide excision repair, TFIIH, subunit TTDA [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR18
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NNM0.1

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