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    PDE318 P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844416, updated on 7-Sep-2023

    Summary

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    Gene symbol
    PDE318
    Gene description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Primary source
    Araport:AT1G80770
    Locus tag
    AT1G80770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23A5.12; F23A5_12; pigment defective 318
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (30355025..30357988)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Transcription factor TFIIIC, tau55-related protein Neighboring gene Ribosomal protein L30/L7 family protein Neighboring gene NOD26-like intrinsic protein 6;1 Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene XH/XS domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001198522.1
    NM_001335005.1
    NM_001335006.1
    NM_001335007.1
    NM_001335008.1
    NM_106725.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    NP_001185451.1
    • pigment defective 318 (PDE318); FUNCTIONS IN: GTP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1).
    NP_178192.1
    • pigment defective 318 (PDE318); FUNCTIONS IN: ferrous iron transmembrane transporter activity, GTP binding; INVOLVED IN: ferrous iron transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), Ferrous iron transport protein B, N-terminal (InterPro:IPR011619); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 11067 Blast hits to 11052 proteins in 2859 species: Archae - 320; Bacteria - 7505; Metazoa - 379; Fungi - 348; Plants - 242; Viruses - 0; Other Eukaryotes - 2273 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30355025..30357988
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106725.5 → NP_178192.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178192.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAU9, A0A5S9WW58, Q8L7Q9
      Conserved Domains (2) summary
      cd01897
      Location:254 → 432
      NOG; Nucleolar GTP-binding protein (NOG)
      COG1084
      Location:92 → 442
      Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]

    2. NM_001335005.1 → NP_001320866.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAU9, A0A1P8AP60, A0A5S9WW58

    3. NM_001335006.1 → NP_001320868.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAU9, A0A1P8AP55, A0A5S9WW58

    4. NM_001335007.1 → NP_001320869.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAU9, A0A1P8APB2, A0A5S9WW58

    5. NM_001335008.1 → NP_001320867.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAU9, A0A1P8AP72, A0A5S9WW58

    6. NM_001198522.1 → NP_001185451.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185451.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HU14
      Conserved Domains (2) summary
      cd01897
      Location:158 → 336
      NOG; Nucleolar GTP-binding protein (NOG)
      COG1084
      Location:2 → 346
      Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]
    Nucleotide Protein
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