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    AT1G80245 Spc97 / Spc98 family of spindle pole body (SBP) component [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844365, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT1G80245
    Gene description
    Spc97 / Spc98 family of spindle pole body (SBP) component
    Primary source
    Araport:AT1G80245
    Locus tag
    AT1G80245
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (30174101..30175553)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) Neighboring gene tRNA-Trp Neighboring gene Spc97 / Spc98 family of spindle pole body (SBP) component Neighboring gene PENTATRICOPEPTIDE REPEAT 596 Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084383.2
    NM_001334972.1
    NM_001334973.1
    NM_106674.3
    NM_202460.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Spc97 / Spc98 family of spindle pole body (SBP) component
    NP_001077852.1
    • Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00695.3); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_565234.1
    • Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00695.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974189.1
    • Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00695.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30174101..30175553
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334970.1 → NP_001323404.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKW4, A0A1P8AX14, A0A384K9Z6

    2. NM_001334971.1 → NP_001323407.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKW4, A0A1P8AX14, A0A384K9Z6

    3. NM_001084383.2 → NP_001077852.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077852.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMI4, Q0V7R8, Q56YF7, Q8LFC7

    4. NM_001334972.1 → NP_001323406.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WKW4, A0A1P8AX14, A0A384K9Z6

    5. NM_106674.3 → NP_565234.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565234.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMI4, Q0V7R8, Q56YF7, Q8LFC7

    6. NM_001334973.1 → NP_001323405.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMI4, Q0V7R8, Q56YF7, Q8LFC7

    7. NM_202460.1 → NP_974189.1  Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974189.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMI4, Q0V7R8, Q56YF7, Q8LFC7
    Nucleotide Protein
    Heading Accession and Version

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