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    AT1G66500 Pre-mRNA cleavage complex II [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842968, updated on 11-Apr-2024

    Summary

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    Gene symbol
    AT1G66500
    Gene description
    Pre-mRNA cleavage complex II
    Primary source
    Araport:AT1G66500
    Locus tag
    AT1G66500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28G11.6; F28G11_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (24811080..24812661, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene plastid movement impaired 2 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene AAR2 protein family Neighboring gene formyltransferase Neighboring gene Arginyl-tRNA synthetase, class Ic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling. Hunt AG, et al. BMC Genomics, 2008 May 14. PMID 18479511, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_105321.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in termination of RNA polymerase II transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pre-mRNA cleavage complex II
    NP_176823.1
    • Pre-mRNA cleavage complex II; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Pre-mRNA cleavage complex II (TAIR:AT5G43620.1); Has 382 Blast hits to 380 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 132; Plants - 64; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24811080..24812661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105321.4 → NP_176823.1  Pre-mRNA cleavage complex II [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176823.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZG9, Q9C710
      UniProtKB/TrEMBL
      A0A5S9WQ56, A0A654ELL5, A0A7G2E2U5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C710.1

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