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    AT1G27530 ubiquitin-fold modifier-conjugating enzyme [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839644, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G27530
    Gene description
    ubiquitin-fold modifier-conjugating enzyme
    Primary source
    Araport:AT1G27530
    Locus tag
    AT1G27530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T17H3.3; T17H3_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (9562487..9564031, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UvrB/UvrC domain protein (DUF3506) Neighboring gene Glycosyl hydrolase family 47 protein Neighboring gene phosphatidylinositol 3/4-kinase Neighboring gene F-box protein (DUF295)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_102517.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UFM1 conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ufmylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-fold modifier-conjugating enzyme
    NP_564289.1
    • CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9562487..9564031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102517.5 → NP_564289.1  ubiquitin-fold modifier-conjugating enzyme [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564289.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H0X8, Q9SXC8
      UniProtKB/TrEMBL
      A0A178WMM0, A0A5S9W382, A0A654EE87
      Conserved Domains (1) summary
      pfam08694
      Location:8 → 163
      UFC1; Ubiquitin-fold modifier-conjugating enzyme 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SXC8.1

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