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    AT1G03180 non-structural protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839560, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT1G03180
    Gene description
    non-structural protein
    Primary source
    Araport:AT1G03180
    Locus tag
    AT1G03180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K9.21; F15K9_21
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (773358..775362)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene FANTASTIC four-like protein (DUF3049) Neighboring gene RAD3-like DNA-binding helicase protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. COMET Functions as a PCH2 Cofactor in Regulating the HORMA Domain Protein ASY1. Balboni M, et al. Curr Biol, 2020 Nov 2. PMID 32857973
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. COMET Functions as a PCH2 Cofactor in Regulating the HORMA Domain Protein ASY1.
      Title: COMET Functions as a PCH2 Cofactor in Regulating the HORMA Domain Protein ASY1.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001035865.2
    NM_001331392.1
    NM_001331393.1
    NM_001331394.1
    NM_100200.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chiasma assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of exit from mitosis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    non-structural protein
    NP_001030942.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_171817.2
    • unknown protein; Has 36 Blast hits to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      773358..775362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331391.1 → NP_001322984.1  non-structural protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7P5, A0A1P8AVN6

    2. NM_100200.3 → NP_171817.2  non-structural protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171817.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4Z5, A0A384LKA4, A0A5S9SC12, Q5Q0J3

    3. NM_001035865.2 → NP_001030942.1  non-structural protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030942.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7P5, Q5Q0J2

    4. NM_001331392.1 → NP_001322981.1  non-structural protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7P5, A0A1P8AVN6

    5. NM_001331393.1 → NP_001322982.1  non-structural protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4Z5, A0A384LKA4, A0A5S9SC12, Q5Q0J3

    6. NM_001331394.1 → NP_001322983.1  non-structural protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7P5, A0A1P8AVN6
    Nucleotide Protein
    Heading Accession and Version

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