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    AT1G21480 Exostosin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838746, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G21480
    Gene description
    Exostosin family protein
    Primary source
    Araport:AT1G21480
    Locus tag
    AT1G21480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J8.10; F24J8_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (7518946..7521552, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SCARECROW-like 1 Neighboring gene Nodulin MtN3 family protein Neighboring gene uncharacterized protein Neighboring gene hypothetical protein (DUF506) Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101998.2
    NM_202150.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi medial cisterna HDA PubMed 
    located_in endosome HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    Exostosin family protein
    NP_564141.1
    • Exostosin family protein; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 1205 Blast hits to 1196 proteins in 102 species: Archae - 0; Bacteria - 8; Metazoa - 259; Fungi - 4; Plants - 850; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
    NP_973879.1
    • Exostosin family protein; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7518946..7521552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101998.2 → NP_564141.1  Exostosin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564141.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI44, A0A654EDE0, F4HY10, Q8S9K6
      Conserved Domains (1) summary
      pfam03016
      Location:89 → 374
      Exostosin; Exostosin family

    2. NM_202150.2 → NP_973879.1  Exostosin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973879.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI44, F4HY11, Q8S9K6
      Conserved Domains (1) summary
      pfam03016
      Location:89 → 374
      Exostosin; Exostosin family
    Nucleotide Protein
    Heading Accession and Version

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