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    bHLH093 beta HLH protein 93 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836690, updated on 7-Sep-2023

    Summary

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    Gene symbol
    bHLH093
    Gene description
    beta HLH protein 93
    Primary source
    Araport:AT5G65640
    Locus tag
    AT5G65640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    beta HLH protein 93; K21L13.16; K21L13_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (26236964..26239219)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Zincin-like metalloproteases family protein Neighboring gene global transcription factor group E7 Neighboring gene ncRNA Neighboring gene sugar transporter, putative (DUF1195) Neighboring gene hydroxyproline-rich glycoprotein family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Sharma N, et al. Development, 2016 Feb 15. PMID 26758694, Free PMC Article
    2. Arabidopsis FAMA controls the final proliferation/differentiation switch during stomatal development. Ohashi-Ito K, et al. Plant Cell, 2006 Oct. PMID 17088607, Free PMC Article
    3. Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module. Matos JL, et al. Elife, 2014 Oct 10. PMID 25303364, Free PMC Article
    4. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Heim MA, et al. Mol Biol Evol, 2003 May. PMID 12679534
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NFL is a key transcription factor necessary for promotion of flowering under non-inductive short day conditions through the gibberellin signaling pathway.[NFL] [NO FLOWERING IN SHORT DAY]
      Title: NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085332.2
    NM_125962.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within gibberellin catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of gibberellin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    beta HLH protein 93
    NP_001078801.1
    • beta HLH protein 93 (bHLH093); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G10570.1); Has 2660 Blast hits to 2654 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 20; Plants - 2556; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    NP_569014.1
    • beta HLH protein 93 (bHLH093); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G10570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26236964..26239219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125962.4 → NP_569014.1  beta HLH protein 93 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_569014.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPP5, Q8LEZ5, Q9LSL1
      UniProtKB/TrEMBL
      A0A178UDV4, A0A5S9YHB5
      Conserved Domains (1) summary
      smart00353
      Location:181 → 236
      HLH; helix loop helix domain

    2. NM_001085332.2 → NP_001078801.1  beta HLH protein 93 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078801.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LSL1
      Conserved Domains (1) summary
      smart00353
      Location:181 → 236
      HLH; helix loop helix domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSL1.1

    Gene LinkOut

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