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    AT5G61090 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836230, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G61090
    Gene description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Primary source
    Araport:AT5G61090
    Locus tag
    AT5G61090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAF19.21; MAF19_21
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (24574652..24578200, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene histone deacetylase 5 Neighboring gene histone deacetylase of the RPD3/HDA1 superfamily 18 Neighboring gene uncharacterized protein Neighboring gene zinc ion binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001345441.1
    NM_125502.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    NP_200917.4
    • Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61120.1); Has 24046 Blast hits to 15037 proteins in 1367 species: Archae - 80; Bacteria - 6670; Metazoa - 6830; Fungi - 2746; Plants - 3211; Viruses - 972; Other Eukaryotes - 3537 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24574652..24578200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125502.5 → NP_200917.4  Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200917.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GD32, Q9FNQ6
      Conserved Domains (3) summary
      cd06222
      Location:522 → 626
      RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
      pfam02993
      Location:16 → 118
      MCPVI; Minor capsid protein VI
      pfam16031
      Location:41 → 158
      TonB_N; TonB N-terminal region

    2. NM_001345441.1 → NP_001330380.1  Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GD32, Q9FNQ6
    Nucleotide Protein
    Heading Accession and Version

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