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    AT5G60060 F-box SKIP23-like protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836128, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G60060
    Gene description
    F-box SKIP23-like protein (DUF295)
    Primary source
    Araport:AT5G60060
    Locus tag
    AT5G60060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MGO3.4; MGO3_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (24188483..24189765, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nuclear RNA polymerase C1 Neighboring gene BTB/POZ domain-containing protein Neighboring gene ncRNA Neighboring gene ankyrin repeat family protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box SKIP23-like protein (DUF295)
    NP_200814.1
    • CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G17030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24188483..24189765 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125399.2 → NP_200814.1  F-box SKIP23-like protein (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200814.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVG8
      UniProtKB/TrEMBL
      A0A178UA12, A0A5S9YFU0
      Conserved Domains (2) summary
      PLN03215
      Location:11 → 321
      PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
      pfam03478
      Location:301 → 356
      DUF295; Protein of unknown function (DUF295)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVG8.1

    Gene LinkOut

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