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    SHV3 PLC-like phosphodiesterase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828776, updated on 15-Oct-2023

    Summary

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    Gene symbol
    SHV3
    Gene description
    PLC-like phosphodiesterase family protein
    Primary source
    Araport:AT4G26690
    Locus tag
    AT4G26690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M23.30; F10M23_30; GDPDL3; Glycerophosphodiester phosphodiesterase (GDPD) like 3; GLYCEROPHOSPHODIESTERASE-LIKE 2; GPDL2; MRH5; MUTANT ROOT HAIR 5; SHAVEN 3
    Summary
    Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (13456434..13460105, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Neighboring gene miscRNA Neighboring gene tRNA-Ala Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene fimbrin 1 Neighboring gene DNA binding / DNA topoisomerase type I

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The glycerophosphoryl diester phosphodiesterase-like proteins SHV3 and its homologs play important roles in cell wall organization. Hayashi S, et al. Plant Cell Physiol, 2008 Oct. PMID 18718934
    2. Genetic interactions during root hair morphogenesis in Arabidopsis. Parker JS, et al. Plant Cell, 2000 Oct. PMID 11041890, Free PMC Article
    3. Analysis of the root-hair morphogenesis transcriptome reveals the molecular identity of six genes with roles in root-hair development in Arabidopsis. Jones MA, et al. Plant J, 2006 Jan. PMID 16367956
    4. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    5. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SHV3 has an important role in cell wall organization. An shv3-svl1 double mutant has altered crystalline cellulose content with pectin cross-linking modifications.
      Title: The glycerophosphoryl diester phosphodiesterase-like proteins SHV3 and its homologs play important roles in cell wall organization.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_118803.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycerophosphodiester phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell tip growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within guard cell morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type cell wall cellulose metabolic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within root epidermal cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within trichome differentiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PLC-like phosphodiesterase family protein
    NP_567755.1
    • SHAVEN 3 (SHV3); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 2 (TAIR:AT1G66970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13456434..13460105 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118803.5 → NP_567755.1  PLC-like phosphodiesterase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567755.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93ZT1, Q9SZ11
      UniProtKB/TrEMBL
      A0A654FTH9
      Conserved Domains (4) summary
      cd08603
      Location:44 → 343
      GDPD_SHV3_repeat_1; Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
      cd08604
      Location:360 → 660
      GDPD_SHV3_repeat_2; Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
      COG0584
      Location:39 → 345
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      pfam03009
      Location:367 → 654
      GDPD; Glycerophosphoryl diester phosphodiesterase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZ11.3

    Gene LinkOut

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