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    AT4G13170 Ribosomal protein L13 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826931, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT4G13170
    Gene description
    Ribosomal protein L13 family protein
    Primary source
    Araport:AT4G13170
    Locus tag
    AT4G13170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17N18.60; F17N18_60
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (7653594..7656594, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene uncharacterized protein Neighboring gene zein-binding protein (Protein of unknown function, DUF593) Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene CLAVATA3/ESR-RELATED 44

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117386.5

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L13 family protein
    NP_193053.1
    • Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT5G48760.2); Has 1983 Blast hits to 1983 proteins in 630 species: Archae - 297; Bacteria - 430; Metazoa - 343; Fungi - 199; Plants - 322; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7653594..7656594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117386.5 → NP_193053.1  Ribosomal protein L13 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193053.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SVR0
      UniProtKB/TrEMBL
      A0A178V2D8, A0A5S9XS39, A0A654FNV6
      Conserved Domains (1) summary
      PTZ00068
      Location:10 → 190
      PTZ00068; 60S ribosomal protein L13a; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SVR0.1

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