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    CID12 CTC-interacting domain 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826653, updated on 15-Feb-2024

    Summary

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    Gene symbol
    CID12
    Gene description
    CTC-interacting domain 12
    Primary source
    Araport:AT4G10610
    Locus tag
    AT4G10610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRBP37; CTC-interacting domain 12; RBP37; RNA-BINDING PROTEIN 37; T4F9.70; T4F9_70
    Summary
    RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif).
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (6556982..6559602)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family Neighboring gene RNA-directed DNA polymerase (reverse transcriptase)-related family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new Arabidopsis nucleic-acid-binding protein gene is highly expressed in dividing cells during development. Hecht V, et al. Plant Mol Biol, 1997 May. PMID 9177318
    2. MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadenylate binding proteins. Tiwari S, et al. Plant Cell, 2008 Sep. PMID 18796636, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036537.1
    NM_117129.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTC-interacting domain 12
    NP_001031614.1
    • RNA-BINDING PROTEIN 37 (RBP37); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_192799.1
    • CTC-interacting domain 12 (CID12); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.1); Has 2841 Blast hits to 2335 proteins in 253 species: Archae - 0; Bacteria - 4; Metazoa - 1803; Fungi - 259; Plants - 569; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6556982..6559602
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117129.3 → NP_192799.1  CTC-interacting domain 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192799.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q38915, Q9S7N9
      UniProtKB/TrEMBL
      A0A178UWM0, A0A5S9XRB6, A0A7G2EX29
      Conserved Domains (3) summary
      pfam07145
      Location:74 → 88
      PAM2; Ataxin-2 C-terminal region
      cd12459
      Location:148 → 227
      RRM1_CID8_like; RNA recognition motif 1 (RRM1) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:243 → 324
      RRM2_CID8_like; RNA recognition motif 2 (RRM2) found in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins

    2. NM_001036537.1 → NP_001031614.1  CTC-interacting domain 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031614.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EX29, F4JME0
      Conserved Domains (3) summary
      cd12459
      Location:148 → 227
      RRM1_CID8_like; RNA recognition motif 1 in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      cd12460
      Location:243 → 323
      RRM2_CID8_like; RNA recognition motif 2 in Arabidopsis thaliana CTC-interacting domain protein CID8, CID9, CID10, CID11, CID12, CID 13 and similar proteins
      pfam07145
      Location:74 → 88
      PAM2; Ataxin-2 C-terminal region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7N9.1

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