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    TOC75-IV Outer membrane OMP85 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826486, updated on 15-Oct-2023

    Summary

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    Gene symbol
    TOC75-IV
    Gene description
    Outer membrane OMP85 family protein
    Primary source
    Araport:AT4G09080
    Locus tag
    AT4G09080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTOC75-IV; F23J3.110; F23J3_110; translocon at the outer envelope membrane of chloroplasts 75-IV; TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV
    Summary
    Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (5803788..5806422)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene TATA-binding related factor (TRF) of subunit 20 of Mediator complex Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A molecular-genetic study of the Arabidopsis Toc75 gene family. Baldwin A, et al. Plant Physiol, 2005 Jun. PMID 15908591, Free PMC Article
    2. The roles of toc34 and toc75 in targeting the toc159 preprotein receptor to chloroplasts. Wallas TR, et al. J Biol Chem, 2003 Nov 7. PMID 12951325
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001340610.1
    NM_001340611.1
    NM_116977.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within etioplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein targeting to chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Outer membrane OMP85 family protein
    NP_192647.2
    • TOC75-IV; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 75-III (TAIR:AT3G46740.1); Has 439 Blast hits to 437 proteins in 90 species: Archae - 0; Bacteria - 160; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      5803788..5806422
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116977.3 → NP_192647.2  Outer membrane OMP85 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192647.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5IZC8, Q9M0R9
      UniProtKB/TrEMBL
      A0A7G2EW09
      Conserved Domains (1) summary
      PLN03138
      Location:1 → 396
      PLN03138; Protein TOC75; Provisional

    2. NM_001340610.1 → NP_001329162.1  Outer membrane OMP85 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6V9, A0A5S9XRC8

    3. NM_001340611.1 → NP_001329163.1  Outer membrane OMP85 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6W0, A0A7G2EW09
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5IZC8.1

    Gene LinkOut

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