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    DJ1F Class I glutamine amidotransferase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824625, updated on 15-Feb-2024

    Summary

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    Gene symbol
    DJ1F
    Gene description
    Class I glutamine amidotransferase-like superfamily protein
    Primary source
    Araport:AT3G54600
    Locus tag
    AT3G54600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DJ-1f
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20210792..20213172)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Proline-rich extensin-like family protein Neighboring gene hydroxyproline-rich glycoprotein Neighboring gene histone acetyltransferase of the GNAT family 1 Neighboring gene basic leucine zipper 25

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel glyoxalases from Arabidopsis thaliana. Kwon K, et al. FEBS J, 2013 Jul. PMID 23651081
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115317.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lactoylglutathione lyase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Class I glutamine amidotransferase-like superfamily protein
    NP_191023.1
    • Class I glutamine amidotransferase-like superfamily protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT2G38860.2); Has 5251 Blast hits to 3173 proteins in 1205 species: Archae - 295; Bacteria - 4620; Metazoa - 9; Fungi - 11; Plants - 126; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20210792..20213172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115317.6 → NP_191023.1  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191023.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1G8
      UniProtKB/TrEMBL
      A0A178VKD1, A0A7G2ERC9
      Conserved Domains (1) summary
      cd03169
      Location:212 → 393
      GATase1_PfpI_1; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1G8.1

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