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    YSL6 YELLOW STRIPE like 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822319, updated on 7-Sep-2023

    Summary

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    Gene symbol
    YSL6
    Gene description
    YELLOW STRIPE like 6
    Primary source
    Araport:AT3G27020
    Locus tag
    AT3G27020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtYSL6; YELLOW STRIPE like 6
    Summary
    Arabidopsis thaliana metal-nicotianamine transporter YSL6
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    Genomic context

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    See YSL6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (9961277..9964737, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene actin related protein 2 Neighboring gene TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 Neighboring gene uncharacterized protein Neighboring gene GPI-anchored-like protein (DUF 3339)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana Yellow Stripe1-Like4 and Yellow Stripe1-Like6 localize to internal cellular membranes and are involved in metal ion homeostasis. Conte SS, et al. Front Plant Sci, 2013. PMID 23898343, Free PMC Article
    2. The Arabidopsis YELLOW STRIPE LIKE4 and 6 transporters control iron release from the chloroplast. Divol F, et al. Plant Cell, 2013 Mar. PMID 23512854, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YSL4 and YSL6 are required for iron to exit the chloroplasts.
      Title: The Arabidopsis YELLOW STRIPE LIKE4 and 6 transporters control iron release from the chloroplast.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_113616.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within iron ion transmembrane transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    YELLOW STRIPE like 6
    NP_566806.1
    • YELLOW STRIPE like 6 (YSL6); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 4 (TAIR:AT5G41000.1); Has 1640 Blast hits to 1588 proteins in 511 species: Archae - 21; Bacteria - 808; Metazoa - 0; Fungi - 241; Plants - 449; Viruses - 1; Other Eukaryotes - 120 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9961277..9964737 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113616.3 → NP_566806.1  YELLOW STRIPE like 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566806.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6R3K6, Q8L859, Q8LB74, Q9LSD4
      UniProtKB/TrEMBL
      A0A178VK88, A0A5S9XGH0
      Conserved Domains (1) summary
      pfam03169
      Location:37 → 657
      OPT; OPT oligopeptide transporter protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6R3K6.2

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