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    AT2G38070 LOW protein: UPF0503-like protein, putative (DUF740) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818385, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT2G38070
    Gene description
    LOW protein: UPF0503-like protein, putative (DUF740)
    Primary source
    Araport:AT2G38070
    Locus tag
    AT2G38070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8P21.2; T8P21_2
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (15928591..15930817)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phosphate transporter 4;2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Laccase/Diphenol oxidase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OCTOPUS-LIKE 2, a novel player in Arabidopsis root and vascular development, reveals a key role for OCTOPUS family genes in root metaphloem sieve tube differentiation. Ruiz Sola MA, et al. New Phytol, 2017 Dec. PMID 28877333
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OPS and OPL2 are the first genes identified that play a role in metaphloem sieve tube differentiation. [OPL2]
      Title: OCTOPUS-LIKE 2, a novel player in Arabidopsis root and vascular development, reveals a key role for OCTOPUS family genes in root metaphloem sieve tube differentiation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129363.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within phloem development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in lateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LOW protein: UPF0503-like protein, putative (DUF740)
    NP_181342.1
    • Protein of unknown function (DUF740); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT3G09070.1); Has 108 Blast hits to 106 proteins in 27 species: Archae - 0; Bacteria - 3; Metazoa - 6; Fungi - 2; Plants - 76; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15928591..15930817
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129363.3 → NP_181342.1  LOW protein: UPF0503-like protein, putative (DUF740) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181342.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRX2, A0A7G2ECE8, F4IRZ1
      Conserved Domains (1) summary
      pfam05340
      Location:35 → 591
      DUF740; Protein of unknown function (DUF740)
    Nucleotide Protein
    Heading Accession and Version

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