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    AT2G25350 Phox (PX) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817073, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT2G25350
    Gene description
    Phox (PX) domain-containing protein
    Primary source
    Araport:AT2G25350
    Locus tag
    AT2G25350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22F11.4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (10797353..10801058)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein 712 Neighboring gene low-molecular-weight cysteine-rich 14 Neighboring gene PNAS-3-like protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ENDOSOMAL RAB EFFECTOR WITH PX-DOMAIN, an Interacting Partner of RAB5 GTPases, Regulates Membrane Trafficking to Protein Storage Vacuoles in Arabidopsis. Sakurai HT, et al. Plant Cell, 2016 Jun. PMID 27288222, Free PMC Article
    2. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001335990.1
    NM_001335991.1
    NM_001335992.1
    NM_001335993.1
    NM_128092.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Phox (PX) domain-containing protein
    NP_565591.1
    • Phox (PX) domain-containing protein; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: Phox (PX) domain-containing protein (TAIR:AT4G32160.1); Has 23905 Blast hits to 15623 proteins in 1176 species: Archae - 308; Bacteria - 2272; Metazoa - 12562; Fungi - 2077; Plants - 1184; Viruses - 165; Other Eukaryotes - 5337 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10797353..10801058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128092.2 → NP_565591.1  Phox (PX) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565591.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S8D3
      UniProtKB/TrEMBL
      A0A178VRN3
      Conserved Domains (3) summary
      pfam11365
      Location:439 → 516
      DUF3166; Protein of unknown function (DUF3166)
      cl02563
      Location:47 → 160
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
      cl23720
      Location:387 → 473
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    2. NM_001335992.1 → NP_001325045.1  Phox (PX) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B237

    3. NM_001335991.1 → NP_001325044.1  Phox (PX) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRN3, A0A1P8B1Z5

    4. NM_001335990.1 → NP_001325043.1  Phox (PX) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1Z4, A0A5S9X128

    5. NM_001335993.1 → NP_001325046.1  Phox (PX) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRN3, A0A1P8B1Z5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S8D3.1

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