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    AT2G05540 Glycine-rich protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815103, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT2G05540
    Gene description
    Glycine-rich protein family
    Primary source
    Araport:AT2G05540
    Locus tag
    AT2G05540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20G20.11; T20G20_11
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (2033154..2034283)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glycine-rich protein 3 Neighboring gene Glycine-rich protein family Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126577.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Glycine-rich protein family
    NP_178622.1
    • Glycine-rich protein family; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 (TAIR:AT2G05520.4); Has 20980 Blast hits to 7546 proteins in 779 species: Archae - 6; Bacteria - 3254; Metazoa - 9284; Fungi - 1649; Plants - 4555; Viruses - 118; Other Eukaryotes - 2114 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      2033154..2034283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126577.5 → NP_178622.1  Glycine-rich protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178622.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXA9, A0A7G2E5I1, Q9SL13
      Conserved Domains (1) summary
      pfam07172
      Location:1 → 68
      GRP; Glycine rich protein family
    Nucleotide Protein
    Heading Accession and Version

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