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    AT2G05120 Nucleoporin, Nup133/Nup155-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815060, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT2G05120
    Gene description
    Nucleoporin, Nup133/Nup155-like protein
    Primary source
    Araport:AT2G05120
    Locus tag
    AT2G05120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5G3.2; F5G3_2
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (1841876..1846949, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SCR-like 9 Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202582.1
    NM_001335271.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nucleoporin, Nup133/Nup155-like protein
    NP_001189511.1
    • Nucleoporin, Nup133/Nup155-like; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187).
    NP_001318200.1
    • Nucleoporin, Nup133/Nup155-like; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187); Has 161 Blast hits to 161 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 99; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1841876..1846949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335271.1 → NP_001318200.1  Nucleoporin, Nup133/Nup155-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZE14

    2. NM_001202582.1 → NP_001189511.1  Nucleoporin, Nup133/Nup155-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189511.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IGA4, F4IGA5, Q9SJ43
      Conserved Domains (2) summary
      pfam03177
      Location:920 → 1149
      Nucleoporin_C; Non-repetitive/WGA-negative nucleoporin C-terminal
      pfam08801
      Location:75 → 495
      Nucleoporin_N; Nup133 N terminal like
    Nucleotide Protein
    Heading Accession and Version

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