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    capn9.L calpain 9 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 444426, updated on 11-Apr-2024

    Summary

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    Official Symbol
    capn9.L
    Official Full Name
    calpain 9 L homeolog
    Primary source
    Xenbase:XB-GENE-948348
    Locus tag
    XELAEV_18026825mg
    See related
    EnsemblRapid:ENSXLAG00005029858
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    capn9
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    Genomic context

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    See capn9.L in Genome Data Viewer
    Location:
    chromosome: 5L
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (54364138..54411406, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (53117995..53164028, complement)

    Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene URB2 ribosome biogenesis 2 homolog L homeolog Neighboring gene TATA-box binding protein associated factor 5 like L homeolog Neighboring gene uncharacterized LOC121393669 Neighboring gene provisional ortholog of unc-93 homolog A L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC83034

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cysteine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    calpain 9 L homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092528.1 → NP_001085997.1  calpain 9 L homeolog

      See identical proteins and their annotated locations for NP_001085997.1

      Status: PROVISIONAL

      Source sequence(s)
      BC073673
      UniProtKB/TrEMBL
      Q6GN47
      Related
      ENSXLAP00005089395.1, ENSXLAT00005091065.1
      Conserved Domains (3) summary
      pfam00648
      Location:43 → 335
      Peptidase_C2; Calpain family cysteine protease
      pfam01067
      Location:349 → 491
      Calpain_III; Calpain large subunit, domain III
      cl08302
      Location:569 → 616
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      54364138..54411406 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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