U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    aass.L aminoadipate-semialdehyde synthase L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 444409, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    aass.L
    Official Full Name
    aminoadipate-semialdehyde synthase L homeolog
    Primary source
    Xenbase:XB-GENE-943510
    Locus tag
    XELAEV_18017664mg
    See related
    EnsemblRapid:ENSXLAG00005031017
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    aass
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See aass.L in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (76429016..76465883, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (61102527..61139184, complement)

    Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene FAM3 metabolism regulating signaling molecule C L homeolog Neighboring gene protein tyrosine phosphatase, receptor type Z1 L homeolog Neighboring gene FEZ family zinc finger 1 L homeolog Neighboring gene Ca++-dependent secretion activator 2 L homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC82978

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables saccharopine dehydrogenase (NADP+, L-lysine-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables saccharopine dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within L-lysine catabolic process to acetyl-CoA via saccharopine IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within lysine biosynthetic process via aminoadipic acid IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    aminoadipate-semialdehyde synthase L homeolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092511.1 → NP_001085980.1  aminoadipate-semialdehyde synthase L homeolog

      See identical proteins and their annotated locations for NP_001085980.1

      Status: PROVISIONAL

      Source sequence(s)
      BC073642
      UniProtKB/TrEMBL
      A0A974HSU5, Q6GN76
      Related
      ENSXLAP00005092996.1, ENSXLAT00005094679.1
      Conserved Domains (4) summary
      PLN02819
      Location:25 → 917
      PLN02819; lysine-ketoglutarate reductase/saccharopine dehydrogenase
      cd12189
      Location:25 → 466
      LKR_SDH_like; bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme
      pfam03435
      Location:483 → 599
      Sacchrp_dh_NADP; Saccharopine dehydrogenase NADP binding domain
      pfam16653
      Location:603 → 916
      Sacchrp_dh_C; Saccharopine dehydrogenase C-terminal domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      76429016..76465883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018250964.2 → XP_018106453.1  aminoadipate-semialdehyde synthase L homeolog isoform X2

      UniProtKB/TrEMBL
      A0A974HSU5, Q6GN76

    2. XM_041585090.1 → XP_041441024.1  aminoadipate-semialdehyde synthase L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J1MH27, A0A974HSU5
      Related
      ENSXLAP00005092861.1, ENSXLAT00005094543.1
      Conserved Domains (2) summary
      PLN02819
      Location:47 → 939
      PLN02819; lysine-ketoglutarate reductase/saccharopine dehydrogenase
      cd12189
      Location:47 → 488
      LKR_SDH_like; bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Miscellaneous