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    olfm1.S olfactomedin 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398287, updated on 11-Apr-2024

    Summary

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    Official Symbol
    olfm1.S
    Official Full Name
    olfactomedin 1 S homeolog
    Primary source
    Xenbase:XB-GENE-866096
    Locus tag
    XELAEV_18041552mg
    See related
    EnsemblRapid:ENSXLAG00005011658
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    olfm1; olfm1.L
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    Genomic context

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    Location:
    chromosome: 8S
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (29783006..29817207, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (29672188..29706483, complement)

    Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108700642 Neighboring gene uncharacterized LOC108699913 Neighboring gene collagen, type V, alpha 1 S homeolog Neighboring gene lamina-associated polypeptide 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The secreted glycoprotein Noelin-1 promotes neurogenesis in Xenopus. Moreno TA, et al. Dev Biol, 2001 Dec 15. PMID 11784068
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC132187

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within atrioventricular valve formation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within cardiac epithelial to mesenchymal transition ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within negative regulation of gene expression ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within positive regulation of epithelial to mesenchymal transition ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within positive regulation of gene expression ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    olfactomedin 1 S homeolog
    Names
    noelin-1
    olfactomedin 1 L homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001088729.1 → NP_001082198.1  olfactomedin 1 S homeolog

      See identical proteins and their annotated locations for NP_001082198.1

      Status: PROVISIONAL

      Source sequence(s)
      AF416483
      UniProtKB/TrEMBL
      A0A974H590, Q32N63, Q8UVR1
      Related
      ENSXLAP00005034041.1, ENSXLAT00005034921.1
      Conserved Domains (3) summary
      smart00284
      Location:228 → 478
      OLF; Olfactomedin-like domains
      pfam12308
      Location:54 → 152
      Noelin-1; Neurogenesis glycoprotein
      cl02488
      Location:93 → 226
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      29783006..29817207 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018231905.2 → XP_018087394.1  olfactomedin 1 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TEM2, Q8UVR2
      Related
      ENSXLAP00005034045.1, ENSXLAT00005034926.1
    Nucleotide Protein Strain
    Heading Accession and Version

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