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    tyms-1 Thymidylate synthase [ Caenorhabditis elegans ]

    Gene ID: 172149, updated on 11-Apr-2024

    Summary

    Gene symbol
    tyms-1
    Gene description
    Thymidylate synthase
    Primary source
    WormBase:WBGene00022455
    Locus tag
    CELE_Y110A7A.4
    See related
    AllianceGenome:WB:WBGene00022455
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables thymidylate synthase activity. Involved in dTMP biosynthetic process. Predicted to be active in cytosol and mitochondrion. Human ortholog(s) of this gene implicated in gastrointestinal system cancer (multiple); hematologic cancer (multiple); and rheumatoid arthritis. Orthologous to human TYMS (thymidylate synthetase). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    See tyms-1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003279.8 (5138250..5139382)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene 6-phosphofructo-2-kinase domain-containing protein Neighboring gene Myotubularin-related protein 1 Neighboring gene ncRNA Neighboring gene Acetylcholine receptor subunit alpha-type unc-63 Neighboring gene MATH domain-containing protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables thymidylate synthase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables thymidylate synthase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables thymidylate synthase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transferase activity, transferring one-carbon groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in dTMP biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in dTMP biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in dTMP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in dTTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in nucleotide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    Thymidylate synthase
    NP_491532.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      5138250..5139382
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059131.8NP_491532.3  Thymidylate synthase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491532.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N588, Q9Y052
      Conserved Domains (1) summary
      PTZ00164
      Location:1312
      PTZ00164; bifunctional dihydrofolate reductase-thymidylate synthase; Provisional